Index

_

_reactions_dict (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute)

_species_dict (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute)

A

AbstractModel (class in uclchem.model) abundLoadFile (uclchem.model.AbstractModel attribute) abundSaveFile (uclchem.model.AbstractModel attribute) add_crp_photo_to_grain (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute) (uclchem.makerates.network_builder.NetworkBuilder attribute) add_default_freeze() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) add_reactions() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method) add_species() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method)

AMBIPOLAR (uclchem.utils.CollapseMode attribute) analysis() (in module uclchem.analysis) analyze_element_per_phase() (in module uclchem.analysis) apply() (in module uclchem.style) array_to_string() (in module uclchem.makerates.io_functions) ATOMIC_LINE_COOLING (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] auto_enable_rates_storage() (uclchem.makerates.config.MakeratesConfig method) (uclchem.makerates.MakeratesConfig method) auto_initialize_coolant_directory() (in module uclchem) (in module uclchem.advanced.advanced_heating) AVOGADRO_NUMBER (in module uclchem.makerates.heating)

B

BaseNetwork (class in uclchem.makerates) (class in uclchem.makerates.network) BE1_1 (uclchem.utils.CollapseMode attribute) BE4 (uclchem.utils.CollapseMode attribute) BINS (uclchem.utils.TempMode attribute) body_count (uclchem.makerates.Reaction attribute) (uclchem.makerates.reaction.Reaction attribute)

BOLTZMANN_CONSTANT_CGS (in module uclchem.constants) build() (uclchem.makerates.Network class method) (uclchem.makerates.network.Network class method) (uclchem.makerates.network_builder.NetworkBuilder method) build_network() (in module uclchem.makerates) (in module uclchem.makerates.network) build_ode_string() (in module uclchem.makerates.io_functions)

C

calculate_rotational_partition_factor() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) CALORIE_TO_JOULE (in module uclchem.makerates.heating) CARBON_IONIZATION (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] CENTIMETERS_PER_PARSEC (in module uclchem.constants) change_binding_energy() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.Network method) (uclchem.makerates.network.Network method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) change_diffusion_barrier() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) change_reaction_barrier() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.Network method) (uclchem.makerates.network.Network method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) changes_surface_count() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) changes_total_mantle() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) check_charge_conservation() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) check_conservation() (uclchem.model.AbstractModel method) (uclchem.model.GridRunner method) (uclchem.model.SequentialRunner method) check_element_conservation() (in module uclchem.analysis) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) check_error() (uclchem.model.AbstractModel method) (uclchem.utils.SuccessFlag method) check_reaction() (in module uclchem.makerates.io_functions) check_symmetry_factor() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) check_temperature_collision() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) check_three_phase_deprecation() (uclchem.makerates.config.MakeratesConfig method) (uclchem.makerates.MakeratesConfig method) CHEM_INIT_ERROR (uclchem.utils.SuccessFlag attribute) chemical_abun_values (uclchem.model.GridRunner attribute) Cloud (class in uclchem.model) cloud (in module uclchem.functional) Collapse (class in uclchem.model) collapse (in module uclchem.functional) collapse_final_time (uclchem.model.Collapse attribute) collapse_radial_velocity() (in module uclchem.utils) CollapseMode (class in uclchem.utils)

COMPTON_COOLING (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] compute_heating_per_reaction() (in module uclchem.analysis) configure_logging() (in module uclchem.utils) CONSERVATION_ERROR (uclchem.utils.SuccessFlag attribute) construct_incidence() (in module uclchem.analysis) context() (in module uclchem.style) CONTINUUM_EMISSION (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] convert_gas_to_surf() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) convert_surf_to_bulk() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) convert_to_erg() (in module uclchem.makerates.heating) COOLANT_CONFIG_ERROR (uclchem.utils.SuccessFlag attribute) coolant_data_dir (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) COOLANT_DATA_ERROR (uclchem.utils.SuccessFlag attribute) COOLANT_FILE_ERROR (uclchem.utils.SuccessFlag attribute) COOLANT_FORCE_GROUND (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] COOLANT_FORCE_LTE (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] COOLANT_FREQ_TOL_ERROR (uclchem.utils.SuccessFlag attribute) COOLANT_POP_TOL_ERROR (uclchem.utils.SuccessFlag attribute) COOLANT_SOLVER_ERROR (uclchem.utils.SuccessFlag attribute) COOLANT_WARM (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] coolants (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) coolants_file (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) copy_coolant_files() (in module uclchem.makerates.io_functions) COSMIC_RAY (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] CoupledReaction (class in uclchem.makerates.reaction) create_abundance_plot() (in module uclchem.plot) (in module uclchem.plot.compositions) (uclchem.model.AbstractModel method) create_network() (in module uclchem.makerates) (in module uclchem.makerates.network) create_snapshot() (in module uclchem.advanced) (in module uclchem.advanced.worker_state) CShock (class in uclchem.model) cshock (in module uclchem.functional) cshock_dissipation_time() (in module uclchem.utils) current_value (uclchem.advanced.advanced_settings.Setting attribute), [1] custom_reaction_file (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) custom_reaction_type (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute)

D

database_reaction_exothermicity (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute) (uclchem.makerates.network_builder.NetworkBuilder attribute) database_reaction_file (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) database_reaction_type (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) default_elements_to_check (in module uclchem.constants) default_param_dictionary (in module uclchem.constants) default_value (uclchem.advanced.advanced_settings.Setting attribute), [1] derive_phase_from_name() (in module uclchem.analysis) derive_reaction_exothermicity (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute) (uclchem.makerates.network_builder.NetworkBuilder attribute)

diffusion_barrier (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute) disable_reaction() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) draw_panel_abundances() (in module uclchem.plot) (in module uclchem.plot.panels) draw_panel_rate_constants() (in module uclchem.plot) (in module uclchem.plot.panels) draw_panel_rates() (in module uclchem.plot) (in module uclchem.plot.panels) dtype (uclchem.advanced.advanced_settings.Setting attribute) duplicate (uclchem.makerates.Reaction attribute) (uclchem.makerates.reaction.Reaction attribute) DUST_TEMP_HOCUK (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] DUST_TEMP_HOLLENBACH (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] DVODE_STAT_NAMES (in module uclchem.constants)

E

elementList (in module uclchem.makerates.species) elementMass (in module uclchem.makerates.species) enable_rates_storage (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) enthalpies_present (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute) (uclchem.makerates.network_builder.NetworkBuilder attribute) enthalpy (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute)

ER_REACTION_TYPES (in module uclchem.makerates.reaction) ERG_TO_ERG (in module uclchem.makerates.heating) ERG_TO_JOULE (in module uclchem.makerates.heating) EV_TO_ERG (in module uclchem.makerates.heating) EV_TO_JOULE (in module uclchem.makerates.heating) excited_species (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute) (uclchem.makerates.network_builder.NetworkBuilder attribute)

F

FILAMENT (uclchem.utils.CollapseMode attribute) find_constituents() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) find_number_of_consecutive_digits() (in module uclchem.utils) find_reactant() (in module uclchem.makerates.io_functions) find_similar_reactions() (uclchem.makerates.BaseNetwork method) (uclchem.makerates.network.BaseNetwork method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) format_chemical_formula() (in module uclchem.style) format_reaction_label() (in module uclchem.style)

FORTRAN_LINE_LENGTH (in module uclchem.makerates.io_functions) fortran_module (uclchem.advanced.runtime_network.RuntimeNetwork property) (uclchem.advanced.RuntimeNetwork property) from_csv() (uclchem.makerates.Network class method) (uclchem.makerates.network.Network class method) from_file() (uclchem.model.AbstractModel class method) from_lists() (uclchem.makerates.Network class method) (uclchem.makerates.network.Network class method) from_yaml() (uclchem.makerates.config.MakeratesConfig class method) (uclchem.makerates.MakeratesConfig class method) full_array (uclchem.model.AbstractModel attribute) full_parameters (uclchem.model.GridRunner attribute)

G

gains (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute) GAS_GRAIN_COLLISIONS (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] gas_phase_extrapolation (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) (uclchem.makerates.network_builder.NetworkBuilder attribute) GeneralSettings (class in uclchem.advanced) (class in uclchem.advanced.advanced_settings) generate_ode_bit() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) generate_template() (uclchem.makerates.config.MakeratesConfig class method) (uclchem.makerates.MakeratesConfig class method) get() (uclchem.advanced.advanced_settings.Setting method) get_all_partners() (uclchem.makerates.Network method) (uclchem.makerates.network.Network method) get_all_reaction_files() (uclchem.makerates.config.MakeratesConfig method) (uclchem.makerates.MakeratesConfig method) get_all_reaction_types() (uclchem.makerates.config.MakeratesConfig method) (uclchem.makerates.MakeratesConfig method) get_alpha() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_beta() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_binding_energy() (uclchem.advanced.advanced_network.RuntimeSpecies method) (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_change_df() (in module uclchem.analysis) get_charge() (uclchem.advanced.advanced_network.RuntimeSpecies method) (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_collapse_mode() (in module uclchem.utils) get_coolant_active() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) get_coolant_directory() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) get_coolant_restart_mode() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) get_cooling_modules() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) get_dataframes() (uclchem.model.AbstractModel method) get_default_coolant_directory() (in module uclchem.makerates.io_functions) get_default_coolants() (in module uclchem.makerates.io_functions) get_desorb_products() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_desorption_freeze_partners() (in module uclchem.makerates.io_functions) get_desorption_pref() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_diffusion_barrier() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_diffusion_pref() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_dtype() (in module uclchem.utils) get_dust_gas_coupling_method() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) get_enthalpy() (uclchem.advanced.advanced_network.RuntimeSpecies method) (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_exothermicity() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_extrapolation() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_f2py_signature() (in module uclchem.debug) get_failed_solver_attempts() (uclchem.model.AbstractModel method) get_final_abundances_of_species() (uclchem.model.AbstractModel method) get_freeze_alpha() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_freeze_products() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_freeze_products_list() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_gamma() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_heating_modules() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) get_Ix() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_Iy() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_Iz() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_joined_dataframes() (uclchem.model.AbstractModel method) get_level_populations_dataframe() (uclchem.model.AbstractModel method) get_line_solver_attempts() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) get_mass() (uclchem.advanced.advanced_network.RuntimeSpecies method) (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_mono_fraction() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_n_atoms() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_name() (uclchem.advanced.advanced_network.RuntimeSpecies method) (uclchem.makerates.Species method) (uclchem.makerates.species.Species method)

get_network() (in module uclchem.makerates.makerates) get_number_of_grid_workers() (in module uclchem.model) get_pah_abundance() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) get_partner() (uclchem.makerates.reaction.CoupledReaction method) get_product_names() (uclchem.advanced.advanced_network.RuntimeReaction method) get_production_and_destruction() (in module uclchem.analysis) get_products() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_protostellar_model_index() (in module uclchem.utils) get_protostellar_Teff() (in module uclchem.utils) get_pure_products() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_pure_reactants() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_rate() (uclchem.advanced.advanced_network.RuntimeReaction method) get_reactant_names() (uclchem.advanced.advanced_network.RuntimeReaction method) get_reactants() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_reaction() (uclchem.makerates.BaseNetwork method) (uclchem.makerates.network.BaseNetwork method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) get_reaction_dict() (uclchem.makerates.BaseNetwork method) (uclchem.makerates.network.BaseNetwork method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) get_reaction_index() (uclchem.makerates.BaseNetwork method) (uclchem.makerates.network.BaseNetwork method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) get_reaction_list() (uclchem.makerates.BaseNetwork method) (uclchem.makerates.network.BaseNetwork method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) get_reaction_names (in module uclchem.model) get_reaction_table() (in module uclchem.utils) get_reaction_type() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_reactions_by_types() (uclchem.makerates.BaseNetwork method) (uclchem.makerates.Network method) (uclchem.makerates.network.BaseNetwork method) (uclchem.makerates.network.Network method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) get_reduced_mass() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_se_stats_dataframe() (uclchem.model.AbstractModel method) get_solid_fraction() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_solver_efficiency_summary() (uclchem.model.AbstractModel method) get_solver_stats_dataframe() (uclchem.model.AbstractModel method) get_sorted_products() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_sorted_reactants() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_source() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_specie() (uclchem.makerates.BaseNetwork method) (uclchem.makerates.network.BaseNetwork method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) get_species() (in module uclchem.utils) get_species_dict() (uclchem.makerates.BaseNetwork method) (uclchem.makerates.network.BaseNetwork method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) get_species_list() (uclchem.makerates.BaseNetwork method) (uclchem.makerates.network.BaseNetwork method) (uclchem.makerates.network.NetworkABC method) (uclchem.makerates.NetworkABC method) get_species_names (in module uclchem.model) get_species_table() (in module uclchem.utils) get_standard_desorb_products() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_symmetry_factor() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_temphigh() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_templow() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) get_total_swap() (in module uclchem.analysis) get_vdes() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_vdiff() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) get_volcano_fraction() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) give_start_abund (uclchem.model.AbstractModel attribute) grain_assisted_recombination_file (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) GRAVITATIONAL_CONSTANT_CGS (in module uclchem.constants) grid_file (uclchem.model.GridRunner attribute) grid_iter() (uclchem.model.GridRunner static method) GridRunner (class in uclchem.model)

H

H2_COLLISIONALLY_INDUCED (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] H2_FORMATION (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] H2_FUV_PUMPING (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1]

H2_PHOTODISSOCIATION (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] has_attr() (uclchem.model.AbstractModel method) HeatingSettings (class in uclchem.advanced) (class in uclchem.advanced.advanced_heating) hot_core (in module uclchem.functional) HYDROGEN_MASS_CGS (in module uclchem.constants)

I

important_reactions (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute) initialize_coolant_directory() (in module uclchem.advanced.advanced_heating) input_reactions (uclchem.makerates.network_builder.NetworkBuilder attribute) input_species (uclchem.makerates.network_builder.NetworkBuilder attribute) INT_TOO_MANY_FAILS_ERROR (uclchem.utils.SuccessFlag attribute) INT_UNRECOVERABLE_ERROR (uclchem.utils.SuccessFlag attribute) is_bulk_reaction() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) is_bulk_species() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) is_edited (uclchem.advanced.advanced_settings.Setting attribute), [1] is_file_path (uclchem.advanced.advanced_settings.Setting attribute), [1] is_gas_reaction() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) is_grain_species() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method)

is_ice_reaction() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) is_ice_species() (uclchem.advanced.advanced_network.RuntimeSpecies method) (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) is_internal (uclchem.advanced.advanced_settings.Setting attribute), [1] is_ion() (uclchem.advanced.advanced_network.RuntimeSpecies method) (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) is_linear() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) is_number() (in module uclchem.makerates.species) is_parameter (uclchem.advanced.advanced_settings.Setting attribute), [1] is_surface_reaction() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) is_surface_species() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method)

J

JOULE_TO_ERG (in module uclchem.makerates.heating)

JShock (class in uclchem.model) jshock (in module uclchem.functional)

K

KCAL_TO_ERG (in module uclchem.makerates.heating)

kida_parser() (in module uclchem.makerates.io_functions)

L

L_SUN (in module uclchem.utils) legacy_read_output_file() (uclchem.model.AbstractModel method) legacy_read_starting_chemistry() (uclchem.model.AbstractModel method) legacy_write_columnfile() (uclchem.model.AbstractModel method) legacy_write_full() (uclchem.model.AbstractModel method) legacy_write_starting_chemistry() (uclchem.model.AbstractModel method) LH_REACTION_TYPES (in module uclchem.makerates.reaction) list_modules() (uclchem.advanced.advanced_settings.GeneralSettings method) (uclchem.advanced.GeneralSettings method) list_settings() (uclchem.advanced.advanced_settings.ModuleSettings method) load_chem() (uclchem.model.GridRunner method) load_custom_exothermicities() (in module uclchem.makerates.heating) load_from_dataset() (uclchem.model.AbstractModel class method) load_model() (in module uclchem.model) load_network_from_csv() (in module uclchem.makerates) (in module uclchem.makerates.network) load_phys() (uclchem.model.GridRunner method)

LoadedNetwork (class in uclchem.makerates.network_compat) log_configuration() (uclchem.makerates.config.MakeratesConfig method) (uclchem.makerates.MakeratesConfig method) log_dir (uclchem.model.GridRunner attribute) logger (in module uclchem.advanced.advanced_heating) (in module uclchem.advanced.advanced_settings) (in module uclchem.advanced.worker_state) (in module uclchem.makerates.config) (in module uclchem.makerates.heating) (in module uclchem.makerates.io_functions) (in module uclchem.makerates.makerates) (in module uclchem.makerates.network) (in module uclchem.makerates.network_builder) (in module uclchem.makerates.reaction) (in module uclchem.makerates.species) LogLevel (in module uclchem.makerates.makerates) losses (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute)

M

main() (in module uclchem.advanced.generate_metadata) (in module uclchem.makerates.cli) MakeratesConfig (class in uclchem.makerates) (class in uclchem.makerates.config) mass (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute) match_reaction() (in module uclchem.makerates.heating) max_workers (uclchem.model.GridRunner attribute) MISSING_VALUE_FLOAT (in module uclchem.utils) MISSING_VALUE_INTEGER (in module uclchem.utils) Model (class in uclchem.model) model_config (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) model_count (uclchem.model.SequentialRunner attribute) model_id_dict (uclchem.model.GridRunner attribute) model_ids (uclchem.model.GridRunner attribute) model_name_prefix (uclchem.model.GridRunner attribute) model_type (uclchem.model.AbstractModel attribute) (uclchem.model.GridRunner attribute) models (uclchem.model.GridRunner attribute) (uclchem.model.SequentialRunner attribute) modify_reaction_parameters() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) module uclchem uclchem.advanced uclchem.advanced.advanced_heating uclchem.advanced.advanced_network uclchem.advanced.advanced_settings uclchem.advanced.constants uclchem.advanced.generate_metadata uclchem.advanced.runtime_network uclchem.advanced.worker_state uclchem.analysis uclchem.constants uclchem.debug uclchem.functional uclchem.makerates uclchem.makerates.cli uclchem.makerates.config uclchem.makerates.heating uclchem.makerates.io_functions uclchem.makerates.makerates uclchem.makerates.network uclchem.makerates.network_builder uclchem.makerates.network_compat uclchem.makerates.reaction uclchem.makerates.species uclchem.model uclchem.plot uclchem.plot.compositions uclchem.plot.panels uclchem.style uclchem.tests uclchem.utils uclchem.version

module_name (uclchem.advanced.advanced_settings.ModuleSettings attribute) (uclchem.advanced.advanced_settings.Setting attribute), [1] ModuleSettings (class in uclchem.advanced.advanced_settings) MOLECULAR_LINE_COOLING (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] monoFraction (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute) msg (in module uclchem.constants) MutableNetworkABC (class in uclchem.makerates) (class in uclchem.makerates.network)

N

N_DVODE_STATS (in module uclchem.constants) n_out (uclchem.model.AbstractModel attribute) N_PHYSICAL_PARAMETERS (in module uclchem.constants) n_reactions (in module uclchem.constants) N_SE_STATS_PER_COOLANT (in module uclchem.constants) n_species (in module uclchem.constants) N_TOTAL_LEVELS (in module uclchem.constants) name (uclchem.advanced.advanced_settings.Setting attribute), [1] (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute) NCOOLANTS (in module uclchem.constants) NEGATIVE_ABUNDANCE_ERROR (uclchem.utils.SuccessFlag attribute) Network (class in uclchem.makerates) (class in uclchem.makerates.network) network (uclchem.makerates.network_builder.NetworkBuilder property) Network() (in module uclchem.makerates.network_compat)

NetworkABC (class in uclchem.makerates) (class in uclchem.makerates.network) NetworkBuilder (class in uclchem.makerates.network_builder) NetworkState (class in uclchem.advanced) (class in uclchem.advanced.advanced_network) (class in uclchem.makerates.network_compat) NO_REACTANT_OR_PRODUCT (in module uclchem.utils) NoDaemonPool (class in uclchem.model) NoGridParameters (in module uclchem.model) normalize_coolants_file() (uclchem.makerates.config.MakeratesConfig class method) (uclchem.makerates.MakeratesConfig class method) normalize_species_name() (in module uclchem.makerates.species) normalize_to_list() (uclchem.makerates.config.MakeratesConfig class method) (uclchem.makerates.MakeratesConfig class method) normalize_type_to_list() (uclchem.makerates.config.MakeratesConfig class method) (uclchem.makerates.MakeratesConfig class method) NOT_ENOUGH_TIMEPOINTS_ERROR (uclchem.utils.SuccessFlag attribute)

O

on_interrupt() (uclchem.model.AbstractModel method) (uclchem.model.GridRunner method) optional_params (in module uclchem.makerates.makerates) output_directory (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute)

output_drops() (in module uclchem.makerates.io_functions) outputFile (uclchem.model.AbstractModel attribute) overwrite_models (uclchem.model.GridRunner attribute)

P

PARAMETER_READ_ERROR (uclchem.utils.SuccessFlag attribute) parameters_to_grid (uclchem.model.GridRunner attribute) parameters_to_match (uclchem.model.SequentialRunner attribute) parse_fortran_parameters() (in module uclchem.advanced.generate_metadata) parse_species_from_row() (in module uclchem.makerates.heating) partner (uclchem.makerates.reaction.CoupledReaction attribute) PHOTOELECTRIC (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1] PHYSICAL_PARAMETERS (in module uclchem.constants) PHYSICAL_PARAMETERS_HEADER_FORMAT (in module uclchem.model) PHYSICAL_PARAMETERS_VALUE_FORMAT (in module uclchem.model) PHYSICS_INIT_ERROR (uclchem.utils.SuccessFlag attribute) PHYSICS_UPDATE_ERROR (uclchem.utils.SuccessFlag attribute) physics_values (uclchem.model.GridRunner attribute) pickle() (uclchem.model.AbstractModel method) (uclchem.model.SequentialRunner method) PLANCK_CONSTANT_CGS (in module uclchem.constants) plot_rate_summary() (in module uclchem.plot) (in module uclchem.plot.compositions) plot_rates_deepdive() (in module uclchem.plot) (in module uclchem.plot.compositions)

plot_species() (in module uclchem.plot) (in module uclchem.plot.panels) (uclchem.model.AbstractModel method) Postprocess (class in uclchem.model) predict_reduced_mass() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) prefix (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute) prestellar_core (in module uclchem.functional) PrestellarCore (class in uclchem.model) print_all_edited() (uclchem.advanced.advanced_settings.GeneralSettings method) (uclchem.advanced.GeneralSettings method) print_all_settings() (uclchem.advanced.advanced_settings.GeneralSettings method) (uclchem.advanced.GeneralSettings method) print_configuration() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) print_help() (uclchem.makerates.config.MakeratesConfig class method) (uclchem.makerates.MakeratesConfig class method) print_settings() (uclchem.advanced.advanced_settings.ModuleSettings method) Process() (uclchem.model.NoDaemonPool static method)

R

rate_constants_to_dy_and_rates() (in module uclchem.analysis) Reaction (class in uclchem.makerates) (class in uclchem.makerates.reaction) reaction_header (in module uclchem.makerates.reaction) reaction_line_formatter() (in module uclchem.model) reaction_names (uclchem.model.ReactionNamesStore attribute) REACTION_TYPES (in module uclchem.makerates.reaction) ReactionFileTypes (in module uclchem.makerates.config) ReactionNamesStore (class in uclchem.model) reactions (uclchem.makerates.BaseNetwork property) (uclchem.makerates.network.BaseNetwork property) (uclchem.makerates.network.NetworkABC property) (uclchem.makerates.NetworkABC property) read_analysis() (in module uclchem.analysis) read_coolants_file() (in module uclchem.makerates.io_functions) read_grain_assisted_recombination_file() (in module uclchem.makerates.io_functions) read_output_file() (in module uclchem.analysis) read_rate_file() (in module uclchem.analysis) read_reaction_file() (in module uclchem.makerates.io_functions) read_species_file() (in module uclchem.makerates.io_functions) register_model() (in module uclchem.model) REGISTRY (in module uclchem.model) remove_reaction() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method) remove_reaction_by_index() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method) remove_species() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method)

replace_value_with_name() (in module uclchem.makerates.io_functions) reset() (in module uclchem.style) (uclchem.advanced.advanced_settings.Setting method) reset_all() (uclchem.advanced.advanced_settings.GeneralSettings method) (uclchem.advanced.GeneralSettings method) reset_network_from_csv() (uclchem.advanced.advanced_network.NetworkState method) (uclchem.advanced.NetworkState method) reset_state() (uclchem.advanced.advanced_network.NetworkState method) (uclchem.advanced.NetworkState method) reset_to_defaults() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) reset_to_initial_state() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) resolve_path() (uclchem.makerates.config.MakeratesConfig method) (uclchem.makerates.MakeratesConfig method) restore_snapshot() (in module uclchem.advanced) (in module uclchem.advanced.worker_state) run() (uclchem.model.AbstractModel method) (uclchem.model.GridRunner method) (uclchem.model.SequentialRunner method) run_fortran() (uclchem.model.AbstractModel method) (uclchem.model.Cloud method) (uclchem.model.Collapse method) (uclchem.model.CShock method) (uclchem.model.JShock method) (uclchem.model.Model method) (uclchem.model.Postprocess method) (uclchem.model.PrestellarCore method) run_makerates() (in module uclchem.makerates) (in module uclchem.makerates.makerates) run_type (uclchem.model.AbstractModel attribute) (uclchem.model.SequentialRunner attribute) RuntimeNetwork (class in uclchem.advanced) (class in uclchem.advanced.runtime_network) RuntimeReaction (class in uclchem.advanced.advanced_network) RuntimeSpecies (class in uclchem.advanced.advanced_network)

S

sanitize_input_float() (in module uclchem.makerates.species) save_model() (uclchem.model.AbstractModel method) (uclchem.model.SequentialRunner method) SE_STAT_NAMES (in module uclchem.constants) search() (uclchem.advanced.advanced_settings.GeneralSettings method) (uclchem.advanced.GeneralSettings method) SECONDS_PER_YEAR (in module uclchem.constants) separate_worker_types (uclchem.model.AbstractModel attribute) sequenced_model_parameters (uclchem.model.SequentialRunner attribute) SequentialRunner (class in uclchem.model) set() (uclchem.advanced.advanced_settings.Setting method) set_alpha() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_beta() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_binding_energy() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_coolant_active() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) set_coolant_directory() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) set_coolant_restart_mode() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) set_cooling_mechanism() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) set_custom_exothermicities() (in module uclchem.makerates.heating) set_desorb_products() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_desorption_pref() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_diffusion_barrier() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_diffusion_pref() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_dust_gas_coupling_method() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) set_enthalpy() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_exothermicity() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_extrapolation() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_freeze_products() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_gamma() (uclchem.advanced.advanced_network.RuntimeReaction method) (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_heating_mechanism() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) set_Ix() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_Iy() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_Iz() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_line_solver_attempts() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) set_mass() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_mono_fraction() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_n_atoms() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_name() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_pah_abundance() (uclchem.advanced.advanced_heating.HeatingSettings method) (uclchem.advanced.HeatingSettings method) set_partner() (uclchem.makerates.reaction.CoupledReaction method) set_products() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_reactants() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_reaction() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method) set_reaction_dict() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method)

set_reduced_mass() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_solid_fraction() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_source() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_specie() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method) set_species_dict() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method) set_symmetry_factor() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_temphigh() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_templow() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) set_vdes() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_vdiff() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) set_volcano_fraction() (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) Setting (class in uclchem.advanced.advanced_settings) shape (uclchem.advanced.advanced_settings.Setting attribute) skip_reaction_validation() (in module uclchem.makerates.reaction) SMOOTH (uclchem.utils.TempMode attribute) SMOOTH_CUSTOM (uclchem.utils.TempMode attribute) SMOOTH_HIGH (uclchem.utils.TempMode attribute) SMOOTH_LOW (uclchem.utils.TempMode attribute) solidFraction (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute) SOLVER_STATS_OVERFLOW_ERROR (uclchem.utils.SuccessFlag attribute) sort_reactions() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method) sort_species() (uclchem.advanced.runtime_network.RuntimeNetwork method) (uclchem.advanced.RuntimeNetwork method) (uclchem.makerates.MutableNetworkABC method) (uclchem.makerates.Network method) (uclchem.makerates.network.MutableNetworkABC method) (uclchem.makerates.network.Network method) source (uclchem.makerates.Reaction attribute) (uclchem.makerates.reaction.Reaction attribute) Species (class in uclchem.makerates) (class in uclchem.makerates.species) species (uclchem.makerates.BaseNetwork property) (uclchem.makerates.Network property) (uclchem.makerates.network.BaseNetwork property) (uclchem.makerates.network.Network property) (uclchem.makerates.network.NetworkABC property) (uclchem.makerates.NetworkABC property) species_file (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) species_header (in module uclchem.makerates.species) species_indices (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute) species_names (uclchem.model.SpeciesNameStore attribute) species_ode_string() (in module uclchem.makerates.io_functions) SpeciesNameStore (class in uclchem.model) SPECNAME_HEADER_FORMAT (in module uclchem.model) SPECNAME_VALUE_FORMAT (in module uclchem.model) SPEED_OF_LIGHT_CGS (in module uclchem.constants) starting_chemistry_array (uclchem.model.AbstractModel attribute) strip_comments_from_row() (in module uclchem.makerates.io_functions) SUCCESS (uclchem.utils.SuccessFlag attribute) success_flag (uclchem.model.AbstractModel attribute) (uclchem.model.SequentialRunner attribute) SuccessFlag (class in uclchem.utils) symbols (in module uclchem.makerates.species)

T

TempMode (class in uclchem.utils) temporary_changes() (uclchem.advanced.advanced_settings.GeneralSettings method) (uclchem.advanced.GeneralSettings method) test_ode_conservation() (in module uclchem.tests) three_phase (uclchem.makerates.config.MakeratesConfig attribute) (uclchem.makerates.MakeratesConfig attribute) TIMEPOINTS (in module uclchem.constants) timepoints (uclchem.model.AbstractModel attribute)

to_UCL_format() (uclchem.makerates.Reaction method) (uclchem.makerates.reaction.Reaction method) (uclchem.makerates.Species method) (uclchem.makerates.species.Species method) total_element_abundance() (in module uclchem.analysis) truncate_line() (in module uclchem.makerates.io_functions) TUNNELING_REACTION_TYPES (in module uclchem.makerates.reaction) TURBULENT (uclchem.advanced.advanced_heating.HeatingSettings attribute), [1] (uclchem.advanced.HeatingSettings attribute), [1]

U

uclchem module uclchem.advanced module uclchem.advanced.advanced_heating module uclchem.advanced.advanced_network module uclchem.advanced.advanced_settings module uclchem.advanced.constants module uclchem.advanced.generate_metadata module uclchem.advanced.runtime_network module uclchem.advanced.worker_state module uclchem.analysis module uclchem.constants module uclchem.debug module uclchem.functional module uclchem.makerates module uclchem.makerates.cli module uclchem.makerates.config module uclchem.makerates.heating module uclchem.makerates.io_functions module

uclchem.makerates.makerates module uclchem.makerates.network module uclchem.makerates.network_builder module uclchem.makerates.network_compat module uclchem.makerates.reaction module uclchem.makerates.species module uclchem.model module uclchem.plot module uclchem.plot.compositions module uclchem.plot.panels module uclchem.style module uclchem.tests module uclchem.utils module uclchem.version module UCLCHEM_ROOT_DIR (in module uclchem.utils) UCLCHEM_STYLE (in module uclchem.style) un_pickle() (uclchem.model.AbstractModel method) (uclchem.model.SequentialRunner method) user_defined_bulk (uclchem.makerates.Network attribute) (uclchem.makerates.network.Network attribute) (uclchem.makerates.network_builder.NetworkBuilder attribute)

V

validate() (uclchem.advanced.advanced_network.NetworkState method) (uclchem.advanced.NetworkState method) validate_coolants() (uclchem.makerates.config.MakeratesConfig class method) (uclchem.makerates.MakeratesConfig class method) validate_coolants_mutual_exclusion() (uclchem.makerates.config.MakeratesConfig method) (uclchem.makerates.MakeratesConfig method) validate_reaction_files_and_types() (uclchem.makerates.config.MakeratesConfig method) (uclchem.makerates.MakeratesConfig method)

vdes (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute) vdiff (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute) volcFraction (uclchem.makerates.Species attribute) (uclchem.makerates.species.Species attribute)

W

was_read (uclchem.model.AbstractModel attribute) worker_build() (uclchem.model.AbstractModel class method) write_evap_lists() (in module uclchem.makerates.io_functions) write_f90_constants() (in module uclchem.makerates.io_functions) write_jacobian() (in module uclchem.makerates.io_functions)

write_network_file() (in module uclchem.makerates.io_functions) write_odes_f90() (in module uclchem.makerates.io_functions) write_outputs() (in module uclchem.makerates.io_functions) write_python_constants() (in module uclchem.makerates.io_functions) write_reactions() (in module uclchem.makerates.io_functions) write_species() (in module uclchem.makerates.io_functions)

Z

ZERO_INNER_RADIUS_ERROR (uclchem.utils.SuccessFlag attribute)

ZETA_0 (in module uclchem.constants)